Motif HL_13577.1 Version HL_13577.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-3 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6MWN_003 | 6MWN | 0.0000 | 3 | B | IRES | U | 624 | G | 625 | U | 626 | G | 627 | A | 630 | G | 632 | cWW | ncSH | cWH |
| 2 | HL_8C3A_029 | 8C3A | 0.8149 | 5 | 1 | LSU rRNA | C | 1343 | U | 1344 | U | 1347 | U | 1348 | A | 1351 | G | 1353 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUGAGAGG | 1 |
| CUGUUUUGACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGAGAG | 1 |
| UGUUUUGAC | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.81 | Avg 0.41 | Max 0.81
Coloring options: