HL_6GQ1_062
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- CGGAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 6GQ1|1|1|G|2777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GQ1_062 not in the Motif Atlas
- Homologous match to HL_8C3A_061
- Geometric discrepancy: 0.1317
- The information below is about HL_8C3A_061
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
6GQ1|1|1|C|2776
6GQ1|1|1|G|2777
6GQ1|1|1|G|2778
6GQ1|1|1|A|2779
6GQ1|1|1|A|2780
6GQ1|1|1|U|2781
6GQ1|1|1|U|2782
6GQ1|1|1|U|2783
6GQ1|1|1|G|2784
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain a
- 60S ribosomal protein L28
- Chain i
- 60S ribosomal protein L36-A
- Chain o
- 60S ribosomal protein L42-A
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