HL_8C3A_061

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGAAUUUG

Length

9 nucleotides

Bulged bases (A, C, G, U)

2749G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.2

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

8C3A|1|1|C|2748
8C3A|1|1|G|2749
8C3A|1|1|G|2750
8C3A|1|1|A|2751
8C3A|1|1|A|2752
8C3A|1|1|U|2753
8C3A|1|1|U|2754
8C3A|1|1|U|2755
8C3A|1|1|G|2756

Current chains

Chain 1

25S

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AJ

60S ribosomal protein L36

Chain AP

60S ribosomal protein L42-B

Chain t

60S ribosomal protein L13