HL_6GQ1_117

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

ACUGAAGAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQ1_117 not in the Motif Atlas

Homologous match to HL_4V9Q_214

Geometric discrepancy: 0.2268

The information below is about HL_4V9Q_214

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.6

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

6GQ1|1|AX|A|31
6GQ1|1|AX|C|32
6GQ1|1|AX|U|33
6GQ1|1|AX|G|34
6GQ1|1|AX|A|35
6GQ1|1|AX|A|36
6GQ1|1|AX|G|37
6GQ1|1|AX|A|38
6GQ1|1|AX|U|39

Current chains

Chain AX

Transfer RNA - Phe

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AG

40S ribosomal protein S16-A

Chain AY

Messenger RNA