HL_6GQB_005

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

6GQB|1|1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQB_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1901

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6GQB|1|1|U|194
6GQB|1|1|U|195
6GQB|1|1|G|196
6GQB|1|1|G|197
6GQB|1|1|A|198
6GQB|1|1|A|199
6GQB|1|1|C|200
6GQB|1|1|A|201

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A

Chain e

60S ribosomal protein L32