6GQB Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6GQB_001 | 1/1/38:45 | No text annotation | geometric HL_4V9F_006 HL_30068.2 | |
| HL_6GQB_002 | 1/1/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6GQB_003 | 1/1/90:96 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_6GQB_004 | 1/1/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_6GQB_005 | 1/1/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6GQB_006 | 1/1/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6GQB_007 | 1/1/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_6GQB_008 | 1/1/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6GQB_009 | 1/1/303:312 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_6GQB_010 | 1/1/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6GQB_011 | 1/1/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6GQB_012 | 1/1/544:548 | No text annotation | ||
| HL_6GQB_013 | 1/1/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_6GQB_014 | 1/1/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_6GQB_015 | 1/1/687:693 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_6GQB_016 | 1/1/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_6GQB_017 | 1/1/732:737 | GNRA | homologous HL_5TBW_017 NA | |
| HL_6GQB_018 | 1/1/763:768 | No text annotation | homologous HL_5TBW_018 NA | |
| HL_6GQB_019 | 1/1/844:849 | GNRA | homologous HL_8C3A_019 NA | |
| HL_6GQB_121 | 1/1/876:885 | No text annotation | homologous HL_8CRE_019 HL_88205.2 | |
| HL_6GQB_021 | 1/1/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6GQB_022 | 1/1/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6GQB_023 | 1/1/1023:1029 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6GQB_024 | 1/1/1076:1083 | T-loop related | homologous HL_8P9A_136 HL_77436.5 | |
| HL_6GQB_025 | 1/1/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6GQB_026 | 1/1/1148:1155 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6GQB_027 | 1/1/1239:1249 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_6GQB_028 | 1/1/1266:1275 | No text annotation | homologous HL_5TBW_028 NA | |
| HL_6GQB_029 | 1/1/1347:1357 | No text annotation | ||
| HL_6GQB_030 | 1/1/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6GQB_031 | 1/1/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_6GQB_032 | 1/1/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_6GQB_033 | 1/1/1544:1549 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_6GQB_034 | 1/1/1564:1576 | No text annotation | ||
| HL_6GQB_035 | 1/1/1599:1608 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_6GQB_036 | 1/1/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_6GQB_037 | 1/1/1680:1688 | No text annotation | homologous HL_5TBW_037 NA | |
| HL_6GQB_038 | 1/1/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_6GQB_039 | 1/1/1759:1766 | No text annotation | geometric HL_4WF9_011 HL_75660.5 | |
| HL_6GQB_040 | 1/1/1792:1796 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6GQB_041 | 1/1/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_6GQB_042 | 1/1/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6GQB_043 | 1/1/1923:1928 | UNCG | geometric HL_4WF9_040 HL_34617.5 | |
| HL_6GQB_045 | 1/1/2110:2114 | No text annotation | homologous HL_5TBW_045 NA | |
| HL_6GQB_046 | 1/1/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_6GQB_047 | 1/1/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6GQB_048 | 1/1/2220:2225 | GNRA | homologous HL_8C3A_048 NA | |
| HL_6GQB_049 | 1/1/2253:2263 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_6GQB_118 | 1/1/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_6GQB_051 | 1/1/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_6GQB_052 | 1/1/2469:2476 | No text annotation | ||
| HL_6GQB_053 | 1/1/2535:2544 | No text annotation | ||
| HL_6GQB_054 | 1/1/2568:2573 | UNCG | geometric HL_6JQ6_004 HL_34617.5 | |
| HL_6GQB_055 | 1/1/2616:2624 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_6GQB_056 | 1/1/2633:2645 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_6GQB_057 | 1/1/2673:2681 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_6GQB_058 | 1/1/2693:2700 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_6GQB_122 | 1/1/2724:2732 | No text annotation | homologous HL_8P9A_169 HL_80599.2 | |
| HL_6GQB_060 | 1/1/2743:2750 | GNRA with extra cWW | geometric HL_7A0S_056 HL_04259.3 | |
| HL_6GQB_061 | 1/1/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_6GQB_062 | 1/1/2840:2848 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6GQB_063 | 1/1/2897:2904 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_6GQB_064 | 1/1/2920:2926 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6GQB_065 | 1/1/2963:2968 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6GQB_066 | 1/1/3025:3030 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_6GQB_067 | 1/1/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6GQB_068 | 1/1/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6GQB_069 | 1/1/3194:3197 | No text annotation | homologous HL_5TBW_068 NA | |
| HL_6GQB_070 | 1/1/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_6GQB_071 | 1/1/3303:3311 | No text annotation | homologous HL_5TBW_070 NA | |
| HL_6GQB_072 | 1/1/3350:3353 | Mini UNCG | geometric HL_4V88_192 NA | |
| HL_6GQB_073 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6GQB_074 | 1/2/70:81 | No text annotation | geometric HL_6D12_002 HL_48417.5 | |
| HL_6GQB_075 | 1/2/152:162 | No text annotation | ||
| HL_6GQB_076 | 1/2/186:199 | No text annotation | ||
| HL_6GQB_077 | 1/2/230:235 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_6GQB_078 | 1/2/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_6GQB_079 | 1/2/276:279 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
| HL_6GQB_080 | 1/2/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_6GQB_081 | 1/2/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6GQB_082 | 1/2/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6GQB_083 | 1/2/414:419 | UNCG | homologous HL_4V88_196 NA | |
| HL_6GQB_084 | 1/2/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_6GQB_085 | 1/2/491:496 | No text annotation | homologous HL_4V88_198 NA | |
| HL_6GQB_086 | 1/2/520:532 | No text annotation | homologous HL_4V88_199 NA | |
| HL_6GQB_087 | 1/2/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6GQB_088 | 1/2/717:722 | No text annotation | ||
| HL_6GQB_089 | 1/2/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_6GQB_090 | 1/2/776:784 | No text annotation | ||
| HL_6GQB_091 | 1/2/829:843 | Pseudoknot geometry | homologous HL_4V88_205 NA | |
| HL_6GQB_092 | 1/2/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6GQB_093 | 1/2/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_6GQB_094 | 1/2/997:1007 | No text annotation | geometric HL_5J7L_017 HL_75293.5 | |
| HL_6GQB_096 | 1/2/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_6GQB_097 | 1/2/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_6GQB_098 | 1/2/1188:1197 | No text annotation | homologous HL_4V88_212 NA | |
| HL_6GQB_099 | 1/2/1238:1247 | No text annotation | homologous HL_8P9A_216 HL_81538.2 | |
| HL_6GQB_100 | 1/2/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_6GQB_101 | 1/2/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6GQB_102 | 1/2/1359:1364 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_6GQB_103 | 1/2/1396:1402 | GNRA | homologous HL_4V88_217 NA | |
| HL_6GQB_104 | 1/2/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
| HL_6GQB_105 | 1/2/1550:1561 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6GQB_106 | 1/2/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_6GQB_107 | 1/2/1691:1710 | No text annotation | ||
| HL_6GQB_108 | 1/2/1778:1783 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_6GQB_109 | 1/3/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_6GQB_110 | 1/3/88:93 | GNRA | homologous HL_4V9F_072 HL_37824.7 | |
| HL_6GQB_111 | 1/4/47:56 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_93438.2 | |
| HL_6GQB_112 | 1/4/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_6GQB_113 | 1/4/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6GQB_114 | 1/4/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_6GQB_115 | 1/AX/13:22 | No text annotation | homologous HL_4LCK_001 NA | |
| HL_6GQB_116 | 1/AX/31:39 | tRNA anticodon loop | homologous HL_6UFM_002 HL_06059.6 | |
| HL_6GQB_117 | 1/AX/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4YYE_003 HL_28252.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6GQB_020 | No text annotation | ||
| HL_6GQB_044 | No text annotation | ||
| HL_6GQB_050 | No text annotation | ||
| HL_6GQB_119 | No text annotation | ||
| HL_6GQB_059 | No text annotation | ||
| HL_6GQB_120 | No text annotation | ||
| HL_6GQB_095 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6GQB_001 | 1/1/7:8, 1/4/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_6GQB_002 | 1/1/13:15, 1/4/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6GQB_003 | 1/1/27:28, 1/1/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_6GQB_004 | 1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS | homologous IL_5TBW_005 NA | |
| IL_6GQB_005 | 1/1/82:89, 1/1/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_6GQB_006 | 1/1/123:124, 1/1/144:149 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_6GQB_007 | 1/1/125:127, 1/1/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_6GQB_008 | 1/1/163:166, 1/1/256:258 | Other IL | geometric IL_5TBW_064 NA | |
| IL_6GQB_261 | 1/1/169:170, 1/1/248:253 | No text annotation | ||
| IL_6GQB_010 | 1/1/177:178, 1/1/238:241 | Major groove minor groove platform; mini C-loop | geometric IL_1U9S_004 IL_68140.4 | |
| IL_6GQB_011 | 1/1/189:191, 1/1/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_6GQB_012 | 1/1/337:339, 1/4/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_6GQB_013 | 1/1/376:379, 1/1/390:403 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_6GQB_014 | 1/1/404:411, 1/4/12:19 | No text annotation | ||
| IL_6GQB_015 | 1/1/429:431, 1/1/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_6GQB_017 | 1/1/512:513, 1/1/577:579 | Single bulged A | homologous IL_5TBW_018 NA | |
| IL_6GQB_018 | 1/1/517:525, 1/1/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_6GQB_019 | 1/1/531:538, 1/1/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_6GQB_020 | 1/1/541:544, 1/1/548:550 | No text annotation | ||
| IL_6GQB_262 | 1/1/668:670, 1/1/792:794 | Isolated non-canonical cWW pair | homologous IL_8CRE_023 IL_87907.2 | |
| IL_6GQB_022 | 1/1/680:684, 1/1/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_6GQB_023 | 1/1/725:728, 1/1/741:745 | UAA/GAN | homologous IL_5TBW_023 NA | |
| IL_6GQB_024 | 1/1/752:753, 1/1/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_6GQB_025 | 1/1/755:756, 1/1/775:777 | Single bulged U | homologous IL_5TBW_025 NA | |
| IL_6GQB_026 | 1/1/758:763, 1/1/768:773 | No text annotation | geometric IL_5TBW_026 NA | |
| IL_6GQB_027 | 1/1/803:805, 1/1/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_6GQB_028 | 1/1/805:809, 1/1/931:938 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_6GQB_029 | 1/1/828:829, 1/1/895:897 | Single bulged A | geometric IL_4V9F_025 IL_31462.6 | |
| IL_6GQB_030 | 1/1/833:834, 1/1/859:861 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_6GQB_031 | 1/1/834:838, 1/1/855:859 | Triple sheared | geometric IL_4WF9_024 IL_50730.2 | |
| IL_6GQB_032 | 1/1/869:872, 1/1/888:890 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_6GQB_033 | 1/1/873:875, 1/1/886:887 | Single bulged U | geometric IL_5TBW_032 NA | |
| IL_6GQB_034 | 1/1/907:909, 1/1/919:923 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_6GQB_035 | 1/1/954:956, 1/1/965:967 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_6GQB_036 | 1/1/969:970, 1/1/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_6GQB_037 | 1/1/977:982, 1/1/1101:1104 | No text annotation | ||
| IL_6GQB_038 | 1/1/983:985, 1/1/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6GQB_039 | 1/1/991:997, 1/1/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5TBW_038 NA | |
| IL_6GQB_040 | 1/1/997:998, 1/1/1050:1052 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_6GQB_041 | 1/1/999:1004, 1/1/1046:1049 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_6GQB_042 | 1/1/1006:1009, 1/1/1041:1044 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_6GQB_043 | 1/1/1009:1011, 1/1/1039:1041 | Isolated non-canonical cWW pair | homologous IL_5TBW_042 NA | |
| IL_6GQB_044 | 1/1/1015:1020, 1/1/1032:1035 | No text annotation | ||
| IL_6GQB_045 | 1/1/1069:1071, 1/1/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_6GQB_046 | 1/1/1074:1076, 1/1/1083:1084 | Single bulged A | homologous IL_5TBW_045 NA | |
| IL_6GQB_047 | 1/1/1120:1122, 1/1/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_6GQB_048 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_6GQB_049 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_6GQB_050 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_6GQB_051 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation | homologous IL_5TBW_051 NA | |
| IL_6GQB_052 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6GQB_053 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_6GQB_054 | 1/1/1218:1226, 1/1/1283:1287 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_6GQB_055 | 1/1/1234:1238, 1/1/1250:1254 | No text annotation | homologous IL_8C3A_058 NA | |
| IL_6GQB_056 | 1/1/1262:1266, 1/1/1275:1277 | No text annotation | geometric IL_6CZR_136 NA | |
| IL_6GQB_057 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_6GQB_058 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6GQB_263 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn | homologous IL_8CRE_063 IL_70923.9 | |
| IL_6GQB_060 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_6GQB_061 | 1/1/1444:1450, 1/1/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_6GQB_246 | 1/1/1501:1505, 1/1/1513:1515 | C-loop | homologous IL_8C3A_482 NA | |
| IL_6GQB_063 | 1/1/1532:1536, 1/1/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6GQB_064 | 1/1/1561:1562, 1/1/1577:1579 | Single stack bend | geometric IL_4WF9_089 IL_26793.1 | |
| IL_6GQB_065 | 1/1/1562:1564, 1/1/1576:1577 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6GQB_066 | 1/1/1618:1621, 1/1/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_6GQB_067 | 1/1/1623:1627, 1/1/1817:1822 | No text annotation | ||
| IL_6GQB_068 | 1/1/1627:1631, 1/1/1812:1817 | No text annotation | ||
| IL_6GQB_069 | 1/1/1645:1649, 1/1/1806:1810 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_6GQB_070 | 1/1/1661:1663, 1/1/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_6GQB_071 | 1/1/1669:1670, 1/1/1778:1780 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_6GQB_072 | 1/1/1670:1671, 1/1/1776:1778 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_6GQB_073 | 1/1/1694:1698, 1/1/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_6GQB_074 | 1/1/1702:1707, 1/1/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_6GQB_075 | 1/1/1711:1717, 1/1/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6GQB_076 | 1/1/1883:1889, 1/1/2346:2349 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_6GQB_077 | 1/1/1895:1897, 1/1/2338:2340 | Isolated tWW turn | homologous IL_5TBW_075 NA | |
| IL_6GQB_078 | 1/1/1898:1901, 1/1/2336:2337 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_6GQB_248 | 1/1/1898:1906, 1/1/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6GQB_079 | 1/1/1901:1906, 1/1/2333:2336 | Intercalated tWH | geometric IL_4WF9_065 IL_76758.2 | |
| IL_6GQB_080 | 1/1/1918:1923, 1/1/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_6GQB_081 | 1/1/1940:1942, 1/1/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6GQB_082 | 1/1/1947:1948, 1/1/2098:2101 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6GQB_083 | 1/1/2128:2129, 1/1/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6GQB_084 | 1/1/2156:2161, 1/1/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6GQB_085 | 1/1/2196:2199, 1/1/2245:2246 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6GQB_086 | 1/1/2200:2201, 1/1/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6GQB_087 | 1/1/2204:2206, 1/1/2237:2238 | Single bulged U | homologous IL_5TBW_086 NA | |
| IL_6GQB_088 | 1/1/2206:2210, 1/1/2235:2237 | Major groove platform with extra pair | geometric IL_5TBW_011 NA | |
| IL_6GQB_089 | 1/1/2210:2216, 1/1/2230:2235 | No text annotation | ||
| IL_6GQB_249 | 1/1/2211:2217, 1/1/2228:2234 | No text annotation | homologous IL_8P9A_316 IL_88116.2 | |
| IL_6GQB_090 | 1/1/2216:2217, 1/1/2228:2230 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6GQB_091 | 1/1/2276:2277, 1/1/2307:2310 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_6GQB_092 | 1/1/2277:2288, 1/1/2304:2307 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_6GQB_093 | 1/1/2391:2394, 1/1/2986:2988 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_6GQB_094 | 1/1/2396:2398, 1/1/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6GQB_095 | 1/1/2409:2411, 1/1/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6GQB_096 | 1/1/2412:2413, 1/1/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6GQB_097 | 1/1/2423:2425, 1/1/2604:2607 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_6GQB_098 | 1/1/2444:2449, 1/1/2497:2503 | No text annotation | ||
| IL_6GQB_099 | 1/1/2450:2452, 1/1/2495:2496 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6GQB_100 | 1/1/2452:2463, 1/1/2492:2495 | No text annotation | ||
| IL_6GQB_102 | 1/1/2466:2469, 1/1/2476:2489 | No text annotation | ||
| IL_6GQB_103 | 1/1/2520:2526, 1/1/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_6GQB_104 | 1/1/2614:2615, 1/1/2625:2627 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_6GQB_105 | 1/1/2666:2668, 1/1/2686:2690 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_6GQB_106 | 1/1/2718:2721, 1/1/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_6GQB_107 | 1/1/2770:2773, 1/1/2787:2788 | Single stack bend with bulge | homologous IL_5TBW_101 NA | |
| IL_6GQB_108 | 1/1/2823:2824, 1/1/2865:2867 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_6GQB_251 | 1/1/2823:2826, 1/1/2863:2867 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_6GQB_109 | 1/1/2824:2826, 1/1/2863:2865 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 IL_87907.2 | |
| IL_6GQB_110 | 1/1/2826:2830, 1/1/2858:2863 | No text annotation | ||
| IL_6GQB_111 | 1/1/2835:2839, 1/1/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6GQB_112 | 1/1/2876:2877, 1/1/2949:2951 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_6GQB_113 | 1/1/2879:2881, 1/1/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_6GQB_114 | 1/1/2881:2882, 1/1/2940:2943 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_6GQB_115 | 1/1/2889:2891, 1/1/2912:2914 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_6GQB_252 | 1/1/2889:2892, 1/1/2909:2914 | No text annotation | homologous IL_8P9A_338 IL_07469.2 | |
| IL_6GQB_116 | 1/1/2891:2892, 1/1/2909:2912 | Major groove platform with intercalation | geometric IL_5TBW_111 NA | |
| IL_6GQB_117 | 1/1/2918:2920, 1/1/2926:2928 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_6GQB_118 | 1/1/2960:2961, 1/1/2970:2972 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_6GQB_119 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_6GQB_120 | 1/1/3012:3014, 1/1/3040:3042 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
| IL_6GQB_121 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_116 NA | |
| IL_6GQB_122 | 1/1/3047:3051, 1/1/3091:3094 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_6GQB_123 | 1/1/3054:3059, 1/1/3084:3088 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_6GQB_124 | 1/1/3063:3064, 1/1/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_6GQB_125 | 1/1/3103:3107, 1/1/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_6GQB_126 | 1/1/3158:3159, 1/1/3291:3293 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6GQB_127 | 1/1/3164:3166, 1/1/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_6GQB_128 | 1/1/3166:3168, 1/1/3283:3284 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6GQB_129 | 1/1/3168:3170, 1/1/3280:3283 | No text annotation | ||
| IL_6GQB_130 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_6GQB_131 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_6GQB_132 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U | homologous IL_5TBW_125 NA | |
| IL_6GQB_133 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_6GQB_134 | 1/1/3233:3235, 1/1/3252:3254 | Isolated non-canonical cWW pair | geometric IL_4V9F_023 IL_87907.2 | |
| IL_6GQB_135 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_5TBW_128 NA | |
| IL_6GQB_136 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_6GQB_137 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U | geometric IL_2UWM_003 IL_89505.4 | |
| IL_6GQB_138 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_6GQB_139 | 1/1/3328:3330, 1/1/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_6GQB_140 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_6GQB_141 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U | geometric IL_5TBW_134 NA | |
| IL_6GQB_142 | 1/1/3342:3345, 1/1/3360:3363 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_6GQB_143 | 1/1/3349:3350, 1/1/3353:3356 | Multiple bulged bases | homologous IL_8C3A_142 NA | |
| IL_6GQB_144 | 1/2/24:26, 1/2/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_6GQB_145 | 1/2/35:37, 1/2/471:473 | Isolated non-canonical cWW pair | geometric IL_5ZTM_002 IL_28037.2 | |
| IL_6GQB_146 | 1/2/37:41, 1/2/466:471 | Triple sheared related | homologous IL_4V88_386 NA | |
| IL_6GQB_147 | 1/2/42:48, 1/2/431:433 | No text annotation | homologous IL_4V88_387 NA | |
| IL_6GQB_148 | 1/2/50:52, 1/2/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6GQB_149 | 1/2/58:63, 1/2/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_6GQB_150 | 1/2/64:69, 1/2/82:86 | UAA/GAN related | geometric IL_5TBW_118 NA | |
| IL_6GQB_151 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_6GQB_152 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_6GQB_153 | 1/2/117:122, 1/2/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_6GQB_154 | 1/2/144:149, 1/2/165:171 | tWH-tWH-tHW-tHW | geometric IL_4LFB_009 IL_12745.1 | |
| IL_6GQB_155 | 1/2/150:152, 1/2/162:164 | Isolated non-canonical cWW contact | homologous IL_4V88_395 NA | |
| IL_6GQB_156 | 1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW | geometric IL_5TBW_056 NA | |
| IL_6GQB_157 | 1/2/206:208, 1/2/257:259 | Isolated non-canonical cWW pair | homologous IL_4V88_398 NA | |
| IL_6GQB_158 | 1/2/265:267, 1/2/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_6GQB_159 | 1/2/270:272, 1/2/284:285 | No text annotation | ||
| IL_6GQB_160 | 1/2/275:276, 1/2/279:281 | Single bulged U | geometric IL_4ZT0_004 NA | |
| IL_6GQB_161 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6GQB_162 | 1/2/318:323, 1/2/345:346 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_6GQB_163 | 1/2/363:365, 1/2/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6GQB_164 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6GQB_165 | 1/2/411:413, 1/2/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_6GQB_166 | 1/2/439:441, 1/2/463:464 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_6GQB_167 | 1/2/443:447, 1/2/460:461 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_6GQB_168 | 1/2/447:448, 1/2/458:460 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_6GQB_169 | 1/2/481:482, 1/2/505:507 | Single bulged A | geometric IL_4PHY_002 IL_31462.6 | |
| IL_6GQB_264 | 1/2/517:518, 1/2/533:535 | No text annotation | homologous IL_8CRE_419 IL_51454.3 | |
| IL_6GQB_171 | 1/2/518:520, 1/2/532:533 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_6GQB_172 | 1/2/550:557, 1/2/587:588 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_6GQB_173 | 1/2/557:559, 1/2/586:587 | Single bulged U | homologous IL_4V88_414 NA | |
| IL_6GQB_174 | 1/2/562:568, 1/2/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6GQB_175 | 1/2/616:622, 1/2/1104:1105 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_6GQB_176 | 1/2/624:626, 1/2/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6GQB_177 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_6GQB_178 | 1/2/646:648, 1/2/686:688 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
| IL_6GQB_179 | 1/2/652:658, 1/2/676:682 | No text annotation | ||
| IL_6GQB_180 | 1/2/703:712, 1/2/726:735 | No text annotation | ||
| IL_6GQB_181 | 1/2/714:717, 1/2/722:724 | No text annotation | ||
| IL_6GQB_265 | 1/2/746:747, 1/2/802:805 | No text annotation | homologous IL_8CRE_428 IL_68140.4 | |
| IL_6GQB_183 | 1/2/748:750, 1/2/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6GQB_184 | 1/2/751:759, 1/2/791:798 | No text annotation | homologous IL_4V88_425 NA | |
| IL_6GQB_185 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_6GQB_266 | 1/2/868:869, 1/2/958:960 | Single bulged U | geometric IL_7KVT_002 IL_89505.4 | |
| IL_6GQB_255 | 1/2/871:873, 1/2/954:956 | Isolated non-canonical cWW pair | geometric IL_8D29_001 IL_87907.2 | |
| IL_6GQB_188 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_6GQB_189 | 1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_6GQB_190 | 1/2/893:895, 1/2/917:919 | Isolated non-canonical cWW pair | geometric IL_3U4M_001 IL_28037.2 | |
| IL_6GQB_256 | 1/2/893:899, 1/2/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_6GQB_191 | 1/2/895:899, 1/2/910:917 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_6GQB_192 | 1/2/985:990, 1/2/1014:1016 | Other IL | geometric IL_4V88_435 NA | |
| IL_6GQB_193 | 1/2/990:994, 1/2/1010:1014 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_6GQB_195 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_6GQB_196 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_6GQB_197 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U | homologous IL_4V88_439 NA | |
| IL_6GQB_198 | 1/2/1111:1118, 1/2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_6GQB_199 | 1/2/1146:1147, 1/2/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_6GQB_200 | 1/2/1149:1151, 1/2/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6GQB_201 | 1/2/1157:1160, 1/2/1617:1621 | C-loop | homologous IL_4V88_443 NA | |
| IL_6GQB_202 | 1/2/1173:1175, 1/2/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_6GQB_203 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6GQB_204 | 1/2/1212:1216, 1/2/1448:1451 | No text annotation | ||
| IL_6GQB_205 | 1/2/1223:1230, 1/2/1257:1260 | No text annotation | ||
| IL_6GQB_258 | 1/2/1223:1233, 1/2/1252:1260 | No text annotation | ||
| IL_6GQB_206 | 1/2/1230:1233, 1/2/1252:1257 | No text annotation | ||
| IL_6GQB_207 | 1/2/1233:1236, 1/2/1249:1252 | No text annotation | ||
| IL_6GQB_208 | 1/2/1268:1270, 1/2/1440:1441 | No text annotation | ||
| IL_6GQB_209 | 1/2/1270:1278, 1/2/1430:1440 | No text annotation | ||
| IL_6GQB_210 | 1/2/1280:1281, 1/2/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6GQB_211 | 1/2/1290:1292, 1/2/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_6GQB_212 | 1/2/1306:1308, 1/2/1317:1318 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_6GQB_267 | 1/2/1342:1348, 1/2/1377:1383 | No text annotation | ||
| IL_6GQB_268 | 1/2/1352:1355, 1/2/1368:1373 | No text annotation | ||
| IL_6GQB_215 | 1/2/1389:1391, 1/2/1407:1412 | Major groove platform; stack outside cWW | homologous IL_4V88_458 NA | |
| IL_6GQB_216 | 1/2/1480:1487, 1/2/1519:1527 | No text annotation | homologous IL_4V88_459 NA | |
| IL_6GQB_217 | 1/2/1488:1494, 1/2/1513:1518 | 180 degree turn | homologous IL_4V88_460 NA | |
| IL_6GQB_218 | 1/2/1495:1498, 1/2/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_6GQB_219 | 1/2/1540:1545, 1/2/1566:1571 | No text annotation | homologous IL_4V88_462 NA | |
| IL_6GQB_220 | 1/2/1636:1638, 1/2/1764:1767 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
| IL_6GQB_221 | 1/2/1638:1641, 1/2/1760:1764 | No text annotation | homologous IL_4V88_464 NA | |
| IL_6GQB_222 | 1/2/1642:1644, 1/2/1757:1759 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_6GQB_223 | 1/2/1644:1647, 1/2/1753:1757 | No text annotation | ||
| IL_6GQB_224 | 1/2/1650:1652, 1/2/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_6GQB_225 | 1/2/1653:1656, 1/2/1744:1747 | Double sheared | geometric IL_4V88_468 NA | |
| IL_6GQB_226 | 1/2/1656:1658, 1/2/1743:1744 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_6GQB_227 | 1/2/1665:1667, 1/2/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6GQB_228 | 1/2/1669:1672, 1/2/1729:1732 | Double sheared | geometric IL_1SAQ_002 NA | |
| IL_6GQB_229 | 1/2/1672:1674, 1/2/1727:1729 | Isolated non-canonical cWW pair | homologous IL_4V88_472 NA | |
| IL_6GQB_230 | 1/2/1675:1678, 1/2/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA | |
| IL_6GQB_231 | 1/2/1678:1682, 1/2/1719:1723 | Triple sheared | geometric IL_2A64_006 IL_50730.2 | |
| IL_6GQB_232 | 1/2/1688:1690, 1/2/1711:1713 | No text annotation | ||
| IL_6GQB_233 | 1/3/15:16, 1/3/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6GQB_234 | 1/3/21:28, 1/3/52:58 | No text annotation | ||
| IL_6GQB_260 | 1/3/21:29, 1/3/49:58 | No text annotation | ||
| IL_6GQB_235 | 1/3/28:29, 1/3/49:52 | No text annotation | geometric IL_8C3A_145 NA | |
| IL_6GQB_236 | 1/3/29:30, 1/3/47:49 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_6GQB_237 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform | geometric IL_5TBW_376 NA | |
| IL_6GQB_238 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6GQB_239 | 1/3/84:87, 1/3/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6GQB_240 | 1/4/64:66, 1/4/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_6GQB_241 | 1/4/68:69, 1/4/89:91 | Single bulged U | homologous IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6GQB_009 | No text annotation | ||
| IL_6GQB_242 | Isolated non-canonical cWW pair | ||
| IL_6GQB_243 | No text annotation | ||
| IL_6GQB_016 | No text annotation | ||
| IL_6GQB_021 | Tandem non-canonical cWW pairs | ||
| IL_6GQB_244 | No text annotation | ||
| IL_6GQB_245 | No text annotation | ||
| IL_6GQB_059 | No text annotation | ||
| IL_6GQB_062 | No text annotation | ||
| IL_6GQB_247 | No text annotation | ||
| IL_6GQB_250 | No text annotation | ||
| IL_6GQB_101 | No text annotation | ||
| IL_6GQB_253 | No text annotation | ||
| IL_6GQB_170 | Minor groove platform with extra cWW | ||
| IL_6GQB_254 | No text annotation | ||
| IL_6GQB_182 | Major groove minor groove platform with extra cWW | ||
| IL_6GQB_186 | Isolated non-canonical cWW pair | ||
| IL_6GQB_187 | Tandem non-canonical cWW pairs | ||
| IL_6GQB_194 | Isolated non-canonical cWW pair | ||
| IL_6GQB_257 | Isolated non-canonical cWW pair | ||
| IL_6GQB_213 | No text annotation | ||
| IL_6GQB_214 | No text annotation | ||
| IL_6GQB_259 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6GQB_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_6GQB_031 | 1/1/113:124, 1/1/144:158, 1/1/263:267 | No text annotation | ||
| J3_6GQB_032 | 1/1/340:356, 1/1/363:368, 1/4/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_6GQB_002 | 1/1/369:376, 1/1/403:404, 1/4/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6GQB_033 | 1/1/369:379, 1/1/390:404, 1/4/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_6GQB_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_6GQB_004 | 1/1/814:820, 1/1/905:907, 1/1/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_6GQB_034 | 1/1/828:831, 1/1/863:867, 1/1/892:897 | No text annotation | homologous J3_8P9A_050 J3_21998.1 | |
| J3_6GQB_005 | 1/1/829:831, 1/1/863:867, 1/1/892:895 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_6GQB_006 | 1/1/986:987, 1/1/1062:1066, 1/1/1092:1098 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_6GQB_007 | 1/1/1230:1232, 1/1/1256:1262, 1/1/1277:1279 | No text annotation | homologous J3_5TBW_007 NA | |
| J3_6GQB_008 | 1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_6GQB_009 | 1/1/1488:1491, 1/1/1837:1843, 1/1/1852:1854 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6GQB_010 | 1/1/1526:1531, 1/1/1591:1595, 1/1/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6GQB_035 | 1/1/1537:1542, 1/1/1551:1561, 1/1/1579:1584 | No text annotation | ||
| J3_6GQB_036 | 1/1/1623:1633, 1/1/1640:1645, 1/1/1810:1822 | No text annotation | ||
| J3_6GQB_011 | 1/1/1631:1632, 1/1/1641:1645, 1/1/1810:1812 | No text annotation | ||
| J3_6GQB_037 | 1/1/1654:1658, 1/1/1791:1792, 1/1/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_6GQB_012 | 1/1/2432:2435, 1/1/2512:2517, 1/1/2590:2597 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_6GQB_013 | 1/1/2529:2532, 1/1/2547:2563, 1/1/2578:2581 | No text annotation | homologous J3_8P9A_060 J3_28639.1 | |
| J3_6GQB_038 | 1/1/2651:2653, 1/1/2754:2765, 1/1/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6GQB_014 | 1/1/2664:2666, 1/1/2690:2692, 1/1/2701:2706 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_6GQB_015 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_6GQB_039 | 1/1/3171:3176, 1/1/3212:3220, 1/1/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_6GQB_016 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_6GQB_017 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation | homologous J3_8P9A_068 J3_67856.4 | |
| J3_6GQB_045 | 1/2/213:228, 1/2/237:243, 1/2/250:252 | No text annotation | ||
| J3_6GQB_018 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_6GQB_041 | 1/2/633:635, 1/2/861:866, 1/2/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_6GQB_019 | 1/2/760:763, 1/2/773:775, 1/2/785:790 | No text annotation | homologous J3_4V88_032 NA | |
| J3_6GQB_020 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6GQB_021 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_6GQB_046 | 1/2/1160:1164, 1/2/1581:1588, 1/2/1608:1617 | No text annotation | ||
| J3_6GQB_022 | 1/2/1168:1171, 1/2/1468:1470, 1/2/1574:1577 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_6GQB_023 | 1/2/1180:1187, 1/2/1198:1209, 1/2/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_6GQB_043 | 1/2/1216:1221, 1/2/1262:1268, 1/2/1441:1448 | No text annotation | ||
| J3_6GQB_025 | 1/2/1283:1288, 1/2/1327:1332, 1/2/1419:1424 | No text annotation | homologous J3_4V88_039 NA | |
| J3_6GQB_026 | 1/2/1293:1294, 1/2/1303:1306, 1/2/1318:1322 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_6GQB_027 | 1/2/1335:1342, 1/2/1383:1389, 1/2/1412:1416 | No text annotation | ||
| J3_6GQB_044 | 1/2/1335:1342, 1/2/1383:1391, 1/2/1407:1416 | No text annotation | ||
| J3_6GQB_028 | 1/2/1470:1474, 1/2/1533:1540, 1/2/1571:1574 | No text annotation | homologous J3_8C3A_044 NA | |
| J3_6GQB_047 | 1/3/9:14, 1/3/66:67, 1/3/111:112 | No text annotation | homologous J3_8P9A_066 J3_12003.2 | |
| J3_6GQB_030 | 1/4/44:45, 1/4/58:64, 1/4/96:100 | No text annotation | homologous J3_8P4V_024 NA | |
| J4_6GQB_013 | 1/1/112:113, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_6GQB_002 | 1/1/185:189, 1/1/205:208, 1/1/212:214, 1/1/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_6GQB_003 | 1/1/1451:1457, 1/1/1475:1476, 1/1/1877:1880, 1/1/2352:2353 | No text annotation | homologous J4_8C3A_003 NA | |
| J4_6GQB_004 | 1/1/1492:1496, 1/1/1520:1525, 1/1/1614:1615, 1/1/1829:1836 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_6GQB_005 | 1/1/1674:1675, 1/1/1693:1694, 1/1/1752:1753, 1/1/1772:1773 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_6GQB_006 | 1/1/2130:2134, 1/1/2146:2150, 1/1/2186:2190, 1/1/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_6GQB_007 | 1/1/2192:2194, 1/1/2248:2249, 1/1/2267:2276, 1/1/2310:2315 | No text annotation | homologous J4_8P9A_018 J4_93343.1 | |
| J4_6GQB_008 | 1/1/2654:2658, 1/1/2712:2716, 1/1/2740:2742, 1/1/2751:2753 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_6GQB_009 | 1/1/3010:3012, 1/1/3042:3043, 1/1/3098:3100, 1/1/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J4_6GQB_010 | 1/2/99:107, 1/2/307:309, 1/2/357:361, 1/2/383:384 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_6GQB_011 | 1/2/622:624, 1/2/975:980, 1/2/1021:1032, 1/2/1103:1104 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J4_6GQB_014 | 1/AX/7:10, 1/AX/25:27, 1/AX/43:49, 1/AX/65:66 | tRNA junction | homologous J4_4V9Q_031 J4_70449.28 | |
| J5_6GQB_001 | 1/1/20:22, 1/4/35:42, 1/4/102:107, 1/4/115:116, 1/4/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_6GQB_002 | 1/1/658:663, 1/1/799:802, 1/1/941:944, 1/1/1375:1376, 1/1/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_6GQB_003 | 1/1/675:678, 1/1/702:706, 1/1/713:721, 1/1/749:751, 1/1/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_6GQB_004 | 1/1/1906:1914, 1/1/1938:1939, 1/1/2109:2110, 1/1/2114:2122, 1/1/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_62523.6 | |
| J5_6GQB_005 | 1/1/2399:2406, 1/1/2815:2823, 1/1/2867:2876, 1/1/2951:2957, 1/1/2975:2980 | No text annotation | ||
| J5_6GQB_006 | 1/1/2416:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2651, 1/1/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J5_6GQB_007 | 1/2/31:35, 1/2/473:479, 1/2/509:516, 1/2/536:546, 1/2/592:595 | No text annotation | ||
| J5_6GQB_008 | 1/2/54:57, 1/2/90:97, 1/2/386:388, 1/2/409:411, 1/2/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_6GQB_009 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:267, 1/2/288:293 | No text annotation | ||
| J5_6GQB_010 | 1/2/636:641, 1/2/693:699, 1/2/739:744, 1/2/807:822, 1/2/850:860 | No text annotation | ||
| J6_6GQB_003 | 1/1/22:27, 1/1/58:68, 1/1/75:79, 1/1/106:110, 1/1/321:331, 1/4/32:35 | No text annotation | ||
| J6_6GQB_002 | 1/1/2416:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2653, 1/1/2754:2765, 1/1/2793:2804 | No text annotation | ||
| J7_6GQB_002 | 1/1/949:954, 1/1/967:968, 1/1/1114:1117, 1/1/1141:1146, 1/1/1157:1161, 1/1/1338:1339, 1/1/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6GQB_040 | No text annotation | ||
| J3_6GQB_042 | No text annotation | ||
| J3_6GQB_024 | No text annotation | ||
| J3_6GQB_029 | No text annotation | ||
| J4_6GQB_001 | No text annotation | ||
| J4_6GQB_012 | No text annotation | ||
| J6_6GQB_001 | No text annotation | ||
| J7_6GQB_001 | No text annotation |
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