HL_6GQB_028
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGUAACAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GQB_028 not in the Motif Atlas
- Homologous match to HL_5TBW_028
- Geometric discrepancy: 0.4098
- The information below is about HL_5TBW_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6GQB|1|1|G|1266
6GQB|1|1|U|1267
6GQB|1|1|G|1268
6GQB|1|1|U|1269
6GQB|1|1|A|1270
6GQB|1|1|A|1271
6GQB|1|1|C|1272
6GQB|1|1|A|1273
6GQB|1|1|A|1274
6GQB|1|1|C|1275
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain AZ
- Elongation factor 2
- Chain P0
- 60S acidic ribosomal protein P0
- Chain P2
- 60S ribosomal protein L12-A
- Chain m
- Ubiquitin-60S ribosomal protein L40
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