HL_6GQB_039
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CACCUUUG
- Length
- 8 nucleotides
- Bulged bases
- 6GQB|1|1|C|1762
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GQB_039 not in the Motif Atlas
- Geometric match to HL_4WF9_011
- Geometric discrepancy: 0.1311
- The information below is about HL_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
6GQB|1|1|C|1759
6GQB|1|1|A|1760
6GQB|1|1|C|1761
6GQB|1|1|C|1762
6GQB|1|1|U|1763
6GQB|1|1|U|1764
6GQB|1|1|U|1765
6GQB|1|1|G|1766
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain U
- 60S ribosomal protein L22-A
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