HL_6GQB_051

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6GQB|1|1|A|2372, 6GQB|1|1|A|2373, 6GQB|1|1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQB_051 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1666

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6GQB|1|1|G|2369
6GQB|1|1|G|2370
6GQB|1|1|G|2371
6GQB|1|1|A|2372
6GQB|1|1|A|2373
6GQB|1|1|C|2374
6GQB|1|1|G|2375
6GQB|1|1|G|2376
6GQB|1|1|G|2377
6GQB|1|1|C|2378

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain e

60S ribosomal protein L32