HL_6GQB_076

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGACCCUUUGGAAG

Length

14 nucleotides

Bulged bases

6GQB|1|2|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQB|1|2|C|186
6GQB|1|2|G|187
6GQB|1|2|A|188
6GQB|1|2|C|189
6GQB|1|2|C|190
6GQB|1|2|C|191
6GQB|1|2|U|192
6GQB|1|2|U|193
6GQB|1|2|U|194
6GQB|1|2|G|195
6GQB|1|2|G|196
6GQB|1|2|A|197
6GQB|1|2|A|198
6GQB|1|2|G|199

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain y

40S ribosomal protein S8-A