3D structure

PDB id
6GQB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
6GQB|1|2|U|232, 6GQB|1|2|G|234
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6GQB_077 not in the Motif Atlas
Geometric match to HL_7RQB_011
Geometric discrepancy: 0.2331
The information below is about HL_7RQB_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_70546.1
Basepair signature
cWW-F
Number of instances in this motif group
18

Unit IDs

6GQB|1|2|C|230
6GQB|1|2|U|231
6GQB|1|2|U|232
6GQB|1|2|C|233
6GQB|1|2|G|234
6GQB|1|2|G|235

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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