HL_6GQB_086

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQB_086 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1736

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6GQB|1|2|A|520
6GQB|1|2|A|521
6GQB|1|2|U|522
6GQB|1|2|G|523
6GQB|1|2|U|524
6GQB|1|2|A|525
6GQB|1|2|A|526
6GQB|1|2|A|527
6GQB|1|2|U|528
6GQB|1|2|A|529
6GQB|1|2|C|530
6GQB|1|2|C|531
6GQB|1|2|U|532

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AO

40S ribosomal protein S24-A

Chain z

40S ribosomal protein S9-A