HL_6GQB_103

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQB_103 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.4946

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6GQB|1|2|U|1396
6GQB|1|2|U|1397
6GQB|1|2|U|1398
6GQB|1|2|C|1399
6GQB|1|2|A|1400
6GQB|1|2|A|1401
6GQB|1|2|G|1402

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AH

40S ribosomal protein S17-B

Chain AS

40S ribosomal protein S28-A