HL_6GQB_117
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUUCGAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GQB_117 not in the Motif Atlas
- Homologous match to HL_4YYE_003
- Geometric discrepancy: 0.254
- The information below is about HL_4YYE_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
6GQB|1|AX|G|53
6GQB|1|AX|U|54
6GQB|1|AX|U|55
6GQB|1|AX|C|56
6GQB|1|AX|G|57
6GQB|1|AX|A|58
6GQB|1|AX|U|59
6GQB|1|AX|C|60
6GQB|1|AX|C|61
Current chains
- Chain AX
- Transfer RNA - Phe
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain BA
- 60S ribosomal protein L1-A
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