HL_6GQB_120

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGCGUAUUGCU

Length

11 nucleotides

Bulged bases

6GQB|1|2|U|779, 6GQB|1|2|U|781, 6GQB|1|2|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQB|1|2|G|775
6GQB|1|2|G|776
6GQB|1|2|C|777
6GQB|1|2|G|778
6GQB|1|2|U|779
6GQB|1|2|A|780
6GQB|1|2|U|781
6GQB|1|2|U|782
6GQB|1|2|G|783
6GQB|1|2|C|784
6GQB|1|2|U|785

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AO

40S ribosomal protein S24-A

Chain u

40S ribosomal protein S4-A