HL_6GQV_015
3D structure
- PDB id
- 6GQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 6GQV|1|1|C|648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GQV_015 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.1359
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6GQV|1|1|U|640
6GQV|1|1|C|641
6GQV|1|1|U|642
6GQV|1|1|U|643
6GQV|1|1|G|644
6GQV|1|1|A|645
6GQV|1|1|A|646
6GQV|1|1|A|647
6GQV|1|1|C|648
6GQV|1|1|A|649
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain a
- 60S ribosomal protein L28
- Chain e
- 60S ribosomal protein L32
Coloring options: