3D structure

PDB id
6GQV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
UCUUGAAACA
Length
10 nucleotides
Bulged bases
6GQV|1|1|C|648
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6GQV_015 not in the Motif Atlas
Homologous match to HL_8C3A_014
Geometric discrepancy: 0.1359
The information below is about HL_8C3A_014
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_43993.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

6GQV|1|1|U|640
6GQV|1|1|C|641
6GQV|1|1|U|642
6GQV|1|1|U|643
6GQV|1|1|G|644
6GQV|1|1|A|645
6GQV|1|1|A|646
6GQV|1|1|A|647
6GQV|1|1|C|648
6GQV|1|1|A|649

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain a
60S ribosomal protein L28
Chain e
60S ribosomal protein L32

Coloring options:


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