HL_6GQV_050

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6GQV|1|1|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_050 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.201

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6GQV|1|1|G|2253
6GQV|1|1|U|2254
6GQV|1|1|A|2255
6GQV|1|1|A|2256
6GQV|1|1|C|2257
6GQV|1|1|U|2258
6GQV|1|1|A|2259
6GQV|1|1|U|2260
6GQV|1|1|G|2261
6GQV|1|1|A|2262
6GQV|1|1|C|2263

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AU

40S ribosomal protein S30-A

Chain AX

Elongation factor 2