HL_6GQV_077

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

6GQV|1|2|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_077 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2382

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6GQV|1|2|C|190
6GQV|1|2|C|191
6GQV|1|2|U|192
6GQV|1|2|U|193
6GQV|1|2|U|194
6GQV|1|2|G|195

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain y

40S ribosomal protein S8-A