HL_6GQV_106
3D structure
- PDB id
- 6GQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 6GQV|1|2|U|1557, 6GQV|1|2|U|1558, 6GQV|1|2|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GQV_106 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.2714
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6GQV|1|2|A|1550
6GQV|1|2|U|1551
6GQV|1|2|U|1552
6GQV|1|2|G|1553
6GQV|1|2|U|1554
6GQV|1|2|A|1555
6GQV|1|2|A|1556
6GQV|1|2|U|1557
6GQV|1|2|U|1558
6GQV|1|2|A|1559
6GQV|1|2|U|1560
6GQV|1|2|U|1561
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AF
- 40S ribosomal protein S15
- Chain AI
- 40S ribosomal protein S18-A
- Chain AJ
- 40S ribosomal protein S19-A
- Chain AT
- 40S ribosomal protein S29-A
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