HL_6GQV_116

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAGUUGGGAG

Length

10 nucleotides

Bulged bases

6GQV|1|AY|U|17, 6GQV|1|AY|G|18, 6GQV|1|AY|G|19, 6GQV|1|AY|G|20, 6GQV|1|AY|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_116 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3823

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6GQV|1|AY|C|13
6GQV|1|AY|A|14
6GQV|1|AY|G|15
6GQV|1|AY|U|16
6GQV|1|AY|U|17
6GQV|1|AY|G|18
6GQV|1|AY|G|19
6GQV|1|AY|G|20
6GQV|1|AY|A|21
6GQV|1|AY|G|22

Current chains

Chain AY

Transfer RNA - Phe

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain BA

60S ribosomal protein L1-A