HL_6GQV_117

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACUGAAGAU

Length

9 nucleotides

Bulged bases

6GQV|1|AY|U|33

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_117 not in the Motif Atlas

Homologous match to HL_6CFJ_107

Geometric discrepancy: 0.1695

The information below is about HL_6CFJ_107

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

6GQV|1|AY|A|31
6GQV|1|AY|C|32
6GQV|1|AY|U|33
6GQV|1|AY|G|34
6GQV|1|AY|A|35
6GQV|1|AY|A|36
6GQV|1|AY|G|37
6GQV|1|AY|A|38
6GQV|1|AY|U|39

Current chains

Chain AY

Transfer RNA - Phe

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AG

40S ribosomal protein S16-A

Chain AZ

Messenger RNA