HL_6GSJ_097

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6GSJ|1|14|G|2751, 6GSJ|1|14|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSJ_097 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.1487

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

6GSJ|1|14|C|2745
6GSJ|1|14|U|2746
6GSJ|1|14|G|2747
6GSJ|1|14|A|2748
6GSJ|1|14|A|2749
6GSJ|1|14|A|2750
6GSJ|1|14|G|2751
6GSJ|1|14|C|2752
6GSJ|1|14|A|2753
6GSJ|1|14|U|2754
6GSJ|1|14|C|2755
6GSJ|1|14|U|2756
6GSJ|1|14|A|2757
6GSJ|1|14|A|2758
6GSJ|1|14|G|2759

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 59

50S ribosomal protein L6