HL_6GSJ_228
3D structure
- PDB id
- 6GSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- CGGGUGAAAGCCUG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GSJ_228 not in the Motif Atlas
- Homologous match to HL_5J7L_022
- Geometric discrepancy: 0.5374
- The information below is about HL_5J7L_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06285.3
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6GSJ|1|1G|C|1008
6GSJ|1|1G|G|1009
6GSJ|1|1G|G|1010
6GSJ|1|1G|G|1011
6GSJ|1|1G|U|1012
6GSJ|1|1G|G|1013
6GSJ|1|1G|A|1014
6GSJ|1|1G|A|1015
6GSJ|1|1G|A|1016
6GSJ|1|1G|G|1017
6GSJ|1|1G|C|1018
6GSJ|1|1G|C|1019
6GSJ|1|1G|U|1020
6GSJ|1|1G|G|1021
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 5A
- 30S ribosomal protein S14 type Z
- Chain AA
- 30S ribosomal protein S19
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