HL_6GSJ_235

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

AGUUCGAAUCU

Length

11 nucleotides

Bulged bases

6GSJ|1|3K|A|59, 6GSJ|1|3K|U|60

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSJ_235 not in the Motif Atlas

Homologous match to HL_4WSM_226

Geometric discrepancy: 0.5268

The information below is about HL_4WSM_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22031.2

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GSJ|1|3K|A|52
6GSJ|1|3K|G|53
6GSJ|1|3K|U|54
6GSJ|1|3K|U|55
6GSJ|1|3K|C|56
6GSJ|1|3K|G|57
6GSJ|1|3K|A|58
6GSJ|1|3K|A|59
6GSJ|1|3K|U|60
6GSJ|1|3K|C|61
6GSJ|1|3K|U|62

Current chains

Chain 3K

tRNAThr

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA