HL_6GSK_079
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 6GSK|1|14|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GSK_079 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.1929
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6GSK|1|14|G|1910
6GSK|1|14|U|1911
6GSK|1|14|A|1912
6GSK|1|14|A|1913
6GSK|1|14|C|1914
6GSK|1|14|U|1915
6GSK|1|14|A|1916
6GSK|1|14|U|1917
6GSK|1|14|A|1918
6GSK|1|14|A|1919
6GSK|1|14|C|1920
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 1G
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1L
- Transfer RNA; tRNA
- Chain 2L
- Transfer RNA; tRNA
- Chain 4L
- mRNA
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