HL_6GSK_081

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6GSK|1|14|A|2030, 6GSK|1|14|A|2031, 6GSK|1|14|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_081 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0821

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

6GSK|1|14|G|2027
6GSK|1|14|U|2028
6GSK|1|14|G|2029
6GSK|1|14|A|2030
6GSK|1|14|A|2031
6GSK|1|14|G|2032
6GSK|1|14|A|2033
6GSK|1|14|U|2034
6GSK|1|14|G|2035
6GSK|1|14|C|2036

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain 95

50S ribosomal protein L21