HL_6GSK_097

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6GSK|1|14|A|2750, 6GSK|1|14|G|2751, 6GSK|1|14|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_097 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.1821

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6GSK|1|14|C|2745
6GSK|1|14|U|2746
6GSK|1|14|G|2747
6GSK|1|14|A|2748
6GSK|1|14|A|2749
6GSK|1|14|A|2750
6GSK|1|14|G|2751
6GSK|1|14|C|2752
6GSK|1|14|A|2753
6GSK|1|14|U|2754
6GSK|1|14|C|2755
6GSK|1|14|U|2756
6GSK|1|14|A|2757
6GSK|1|14|A|2758
6GSK|1|14|G|2759

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 59

50S ribosomal protein L6