HL_6GSK_131

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6GSK|1|1G|U|1450, 6GSK|1|1G|A|1451, 6GSK|1|1G|G|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_131 not in the Motif Atlas

Geometric match to HL_5T16_002

Geometric discrepancy: 0.385

The information below is about HL_5T16_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

6GSK|1|1G|C|1449
6GSK|1|1G|U|1450
6GSK|1|1G|A|1451
6GSK|1|1G|C|1452
6GSK|1|1G|G|1453
6GSK|1|1G|G|1454

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain BA

30S ribosomal protein S20