HL_6GSK_139

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

6GSK|1|1H|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_139 not in the Motif Atlas

Homologous match to HL_7A0S_007

Geometric discrepancy: 0.3019

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6GSK|1|1H|A|225
6GSK|1|1H|G|226
6GSK|1|1H|A|227
6GSK|1|1H|A|228
6GSK|1|1H|A|229
6GSK|1|1H|U|230

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 78

50S ribosomal protein L15