HL_6GSK_187

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_187 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.3415

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6GSK|1|1H|G|2303
6GSK|1|1H|G|2304
6GSK|1|1H|A|2305
6GSK|1|1H|C|2306
6GSK|1|1H|G|2307
6GSK|1|1H|G|2308
6GSK|1|1H|A|2309
6GSK|1|1H|A|2310
6GSK|1|1H|A|2311
6GSK|1|1H|U|2312
6GSK|1|1H|C|2313

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 41

50S ribosomal protein L5