HL_6GSK_202

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GGCGAC

Length

6 nucleotides

Bulged bases

6GSK|1|1J|C|88

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_202 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1731

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6GSK|1|1J|G|86
6GSK|1|1J|G|87
6GSK|1|1J|C|88
6GSK|1|1J|G|89
6GSK|1|1J|A|89|||A
6GSK|1|1J|C|90

Current chains

Chain 1J

5S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 45

50S ribosomal protein L16

Chain D5

50S ribosomal protein L25