HL_6GSK_212
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- GGCUCAUAACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GSK_212 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.3191
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6GSK|1|2L|G|31
6GSK|1|2L|G|32
6GSK|1|2L|C|33
6GSK|1|2L|U|34
6GSK|1|2L|C|35
6GSK|1|2L|A|36
6GSK|1|2L|U|37
6GSK|1|2L|A|38
6GSK|1|2L|A|39
6GSK|1|2L|C|40
6GSK|1|2L|C|41
Current chains
- Chain 2L
- tRNAfMet
Nearby chains
- Chain 1G
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3L
- Transfer RNA; tRNA
- Chain 4A
- 30S ribosomal protein S13
- Chain 4L
- mRNA
- Chain 82
- 30S ribosomal protein S9
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