HL_6GSK_218

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CCUUGGUAAGG

Length

11 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36684.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GSK|1|3L|C|30
6GSK|1|3L|C|31
6GSK|1|3L|U|32
6GSK|1|3L|U|33
6GSK|1|3L|G|34
6GSK|1|3L|G|35
6GSK|1|3L|U|36
6GSK|1|3L|A|37
6GSK|1|3L|A|38
6GSK|1|3L|G|39
6GSK|1|3L|G|40

Current chains

Chain 3L

tRNAThr

Nearby chains

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 2A

30S ribosomal protein S11

Chain 2L

Transfer RNA; tRNA

Chain 4L

mRNA

Chain 62

30S ribosomal protein S7