HL_6GSK_224
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- UUCCCAUUCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 6GSK|1|16|U|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GSK_224 not in the Motif Atlas
- Homologous match to HL_9DFE_067
- Geometric discrepancy: 0.1019
- The information below is about HL_9DFE_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6GSK|1|16|U|34
6GSK|1|16|U|35
6GSK|1|16|C|36
6GSK|1|16|C|37
6GSK|1|16|C|38
6GSK|1|16|A|39
6GSK|1|16|U|40
6GSK|1|16|U|41
6GSK|1|16|C|42
6GSK|1|16|C|43
6GSK|1|16|G|44
6GSK|1|16|A|45
6GSK|1|16|A|46
6GSK|1|16|C|47
6GSK|1|16|A|48
Current chains
- Chain 16
- 5S ribosomal RNA
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 41
- 50S ribosomal protein L5
- Chain A8
- 50S ribosomal protein L18
- Chain M8
- 50S ribosomal protein L31
Coloring options: