HL_6GSK_238

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_238 not in the Motif Atlas

Homologous match to HL_5E81_212

Geometric discrepancy: 0.1422

The information below is about HL_5E81_212

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.6

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

6GSK|1|2L|G|32
6GSK|1|2L|C|33
6GSK|1|2L|U|34
6GSK|1|2L|C|35
6GSK|1|2L|A|36
6GSK|1|2L|U|37
6GSK|1|2L|A|38
6GSK|1|2L|A|39
6GSK|1|2L|C|40

Current chains

Chain 2L

tRNAfMet

Nearby chains

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA

Chain 4L

mRNA

Chain 82

30S ribosomal protein S9