HL_6GSL_036

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGCUUGCG

Length

8 nucleotides

Bulged bases

6GSL|1|14|U|161

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSL_036 not in the Motif Atlas

Geometric match to HL_8C3A_006

Geometric discrepancy: 0.1499

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6GSL|1|14|C|153
6GSL|1|14|G|154
6GSL|1|14|C|155
6GSL|1|14|U|161
6GSL|1|14|U|162
6GSL|1|14|G|171
6GSL|1|14|C|172
6GSL|1|14|G|173

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain F5

50S ribosomal protein L28