HL_6GSL_057

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSL_057 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3079

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6GSL|1|14|C|884
6GSL|1|14|C|885
6GSL|1|14|C|886
6GSL|1|14|A|887
6GSL|1|14|C|888
6GSL|1|14|C|889
6GSL|1|14|A|890
6GSL|1|14|G|892

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 4A

30S ribosomal protein S13