HL_6GSL_086

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6GSL|1|14|A|2268, 6GSL|1|14|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSL_086 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0775

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6GSL|1|14|C|2264
6GSL|1|14|U|2265
6GSL|1|14|A|2266
6GSL|1|14|A|2267
6GSL|1|14|A|2268
6GSL|1|14|A|2269
6GSL|1|14|G|2270
6GSL|1|14|G|2271
6GSL|1|14|U|2272
6GSL|1|14|A|2273
6GSL|1|14|A|2274
6GSL|1|14|C|2275
6GSL|1|14|G|2276

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 45

50S ribosomal protein L16

Chain E5

50S ribosomal protein L27