HL_6GSL_177

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSL_177 not in the Motif Atlas

Homologous match to HL_7RQB_043

Geometric discrepancy: 0.2001

The information below is about HL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43656.2

Basepair signature

cWW-tSH

Number of instances in this motif group

8

Unit IDs

6GSL|1|1H|U|1727
6GSL|1|1H|G|1728
6GSL|1|1H|A|1729
6GSL|1|1H|U|1730
6GSL|1|1H|G|1731
6GSL|1|1H|A|1732
6GSL|1|1H|G|1733

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains