HL_6GSL_236

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

6GSL|1|1H|A|1096

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSL_236 not in the Motif Atlas

Geometric match to HL_2A64_001

Geometric discrepancy: 0.3849

The information below is about HL_2A64_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_57875.1

Basepair signature

cWW-F-F

Number of instances in this motif group

5

Unit IDs

6GSL|1|1H|C|1092
6GSL|1|1H|G|1093
6GSL|1|1H|U|1094
6GSL|1|1H|A|1095
6GSL|1|1H|A|1096
6GSL|1|1H|U|1097
6GSL|1|1H|A|1098
6GSL|1|1H|G|1099

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 48

50S ribosomal protein L11

Chain 51

50S ribosomal protein L6