HL_6GSM_015

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

6GSM|1|2|A|451

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSM_015 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.5167

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6GSM|1|2|U|449
6GSM|1|2|A|450
6GSM|1|2|A|451
6GSM|1|2|U|452
6GSM|1|2|U|453
6GSM|1|2|C|454
6GSM|1|2|A|455

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain Y

40S ribosomal protein S24