HL_6GSM_018

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GCAGCCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSM_018 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.2559

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6GSM|1|2|G|567
6GSM|1|2|C|568
6GSM|1|2|A|569
6GSM|1|2|G|570
6GSM|1|2|C|571
6GSM|1|2|C|572
6GSM|1|2|G|573
6GSM|1|2|C|574

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

RPS23

Chain e

40S ribosomal protein S30