HL_6GSM_040
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- GUGAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GSM_040 not in the Motif Atlas
- Homologous match to HL_4V88_222
- Geometric discrepancy: 0.3481
- The information below is about HL_4V88_222
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6GSM|1|2|G|1776
6GSM|1|2|U|1777
6GSM|1|2|G|1778
6GSM|1|2|A|1779
6GSM|1|2|A|1780
6GSM|1|2|C|1781
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain h
- eL41
- Chain m
- Eukaryotic translation initiation factor eIF-1
- Chain p
- Eukaryotic translation initiation factor 3 subunit B
- Chain q
- Eukaryotic translation initiation factor 3 subunit C
Coloring options: