HL_6GSM_041

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSM_041 not in the Motif Atlas

Homologous match to HL_8P9A_198

Geometric discrepancy: 0.1489

The information below is about HL_8P9A_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93535.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GSM|1|2|U|367
6GSM|1|2|A|368
6GSM|1|2|A|369
6GSM|1|2|G|370
6GSM|1|2|G|371
6GSM|1|2|G|372

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

KLLA0F09812p

Chain J

KLLA0E23673p

Chain L

KLLA0A10483p

Chain W

40S ribosomal protein S22

Chain X

RPS23