HL_6GSN_008

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6GSN|1|2|U|231

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSN_008 not in the Motif Atlas

Geometric match to HL_3SKI_003

Geometric discrepancy: 0.3517

The information below is about HL_3SKI_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14333.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6GSN|1|2|C|229
6GSN|1|2|U|230
6GSN|1|2|U|231
6GSN|1|2|C|232
6GSN|1|2|G|233
6GSN|1|2|G|234

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains