HL_6GSN_012

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSN_012 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1979

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6GSN|1|2|U|367
6GSN|1|2|A|368
6GSN|1|2|A|369
6GSN|1|2|G|370
6GSN|1|2|G|371
6GSN|1|2|G|372

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain C

KLLA0F09812p

Chain J

KLLA0E23673p

Chain L

KLLA0A10483p

Chain W

40S ribosomal protein S22

Chain X

RPS23