HL_6GSN_040
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- GUGAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GSN_040 not in the Motif Atlas
- Homologous match to HL_4V88_222
- Geometric discrepancy: 0.3267
- The information below is about HL_4V88_222
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6GSN|1|2|G|1776
6GSN|1|2|U|1777
6GSN|1|2|G|1778
6GSN|1|2|A|1779
6GSN|1|2|A|1780
6GSN|1|2|C|1781
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain h
- 60S ribosomal protein L41-A
- Chain m
- Eukaryotic translation initiation factor eIF-1
- Chain p
- Eukaryotic translation initiation factor 3 subunit B
- Chain q
- Eukaryotic translation initiation factor 3 subunit C
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