HL_6GSN_044
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GSN_044 not in the Motif Atlas
- Homologous match to HL_8P9A_209
- Geometric discrepancy: 0.3735
- The information below is about HL_8P9A_209
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6GSN|1|2|A|899
6GSN|1|2|G|900
6GSN|1|2|G|901
6GSN|1|2|U|902
6GSN|1|2|G|903
6GSN|1|2|A|904
6GSN|1|2|A|905
6GSN|1|2|A|906
6GSN|1|2|U|907
6GSN|1|2|U|908
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain 3
- mRNA
- Chain B
- 40S ribosomal protein S1
- Chain F
- KLLA0D10659p
- Chain O
- 40S ribosomal protein S14
- Chain a
- 40S ribosomal protein S26
- Chain c
- 40S ribosomal protein S28
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
- Chain p
- Eukaryotic translation initiation factor 3 subunit B
Coloring options: