HL_6GXM_025

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

6GXM|1|A|U|958, 6GXM|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXM_025 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3045

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6GXM|1|A|G|954
6GXM|1|A|U|955
6GXM|1|A|G|956
6GXM|1|A|C|957
6GXM|1|A|U|958
6GXM|1|A|A|959
6GXM|1|A|A|960
6GXM|1|A|C|961
6GXM|1|A|G|962
6GXM|1|A|U|963

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16