6GXM Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6GXM_001 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_6GXM_003 | 1/A/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.7 | |
| HL_6GXM_104 | 1/A/158:168 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_6GXM_006 | 1/A/194:201 | No text annotation | homologous HL_4WF9_006 HL_48677.1 | |
| HL_6GXM_008 | 1/A/246:252 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_6GXM_113 | 1/A/382:392 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_6GXM_013 | 1/A/462:467 | GNRA | homologous HL_4WF9_015 HL_34789.2 | |
| HL_6GXM_016 | 1/A/566:575 | T-loop with 2 stacked bulged bases | geometric HL_7A0S_018 HL_33597.2 | |
| HL_6GXM_018 | 1/A/629:634 | GNRA | homologous HL_5J7L_152 NA | |
| HL_6GXM_021 | 1/A/744:753 | No text annotation | homologous HL_4WF9_023 HL_50204.1 | |
| HL_6GXM_022 | 1/A/779:785 | UNCG variation | geometric HL_1P6V_001 NA | |
| HL_6GXM_023 | 1/A/826:831 | No text annotation | homologous HL_7A0S_024 HL_27530.1 | |
| HL_6GXM_025 | 1/A/954:963 | tRNA anticodon loop | geometric HL_3RG5_006 HL_87268.1 | |
| HL_6GXM_026 | 1/A/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_6GXM_030 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_6GXM_031 | 1/A/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_6GXM_032 | 1/A/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_6GXM_033 | 1/A/1389:1398 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_6GXM_038 | 1/A/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6GXM_109 | 1/A/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
| HL_6GXM_040 | 1/A/1691:1696 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_6GXM_043 | 1/A/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_87681.1 | |
| HL_6GXM_044 | 1/A/1806:1811 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_6GXM_046 | 1/A/1910:1920 | No text annotation | homologous HL_9DFE_046 HL_82185.1 | |
| HL_6GXM_110 | 1/A/1950:1956 | No text annotation | ||
| HL_6GXM_048 | 1/A/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_6GXM_050 | 1/A/2209:2215 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_6GXM_051 | 1/A/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_11974.2 | |
| HL_6GXM_052 | 1/A/2264:2276 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_6GXM_054 | 1/A/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_6GXM_057 | 1/A/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_51853.2 | |
| HL_6GXM_058 | 1/A/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_6GXM_059 | 1/A/2528:2535 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_6GXM_060 | 1/A/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_6GXM_063 | 1/A/2701:2706 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_12125.2 | |
| HL_6GXM_066 | 1/A/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_6GXM_069 | 1/B/86:90 | Mini UNCG | homologous HL_5J7L_204 NA | |
| HL_6GXM_070 | 1/a/12:22 | No text annotation | homologous HL_4LFB_001 HL_73535.1 | |
| HL_6GXM_073 | 1/a/186:191 | GNRA | homologous HL_5J7L_004 NA | |
| HL_6GXM_075 | 1/a/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_6GXM_076 | 1/a/296:301 | GNRA | homologous HL_5J7L_007 NA | |
| HL_6GXM_077 | 1/a/320:333 | No text annotation | homologous HL_6CZR_079 NA | |
| HL_6GXM_079 | 1/a/379:384 | GNRA | homologous HL_6CZR_081 NA | |
| HL_6GXM_082 | 1/a/522:527 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_6GXM_083 | 1/a/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_86621.1 | |
| HL_6GXM_084 | 1/a/689:698 | No text annotation | homologous HL_4LFB_015 HL_38491.2 | |
| HL_6GXM_085 | 1/a/726:731 | GNRA | homologous HL_5J7L_016 NA | |
| HL_6GXM_086 | 1/a/786:796 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_6GXM_088 | 1/a/862:867 | GNRA | homologous HL_5J7L_019 NA | |
| HL_6GXM_089 | 1/a/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.2 | |
| HL_6GXM_090 | 1/a/963:972 | No text annotation | homologous HL_5J7L_021 NA | |
| HL_6GXM_093 | 1/a/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.2 | |
| HL_6GXM_098 | 1/a/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_6GXM_100 | 1/a/1515:1520 | GNRA | homologous HL_4LFB_032 HL_34789.2 | |
| HL_6GXM_102 | 1/x/32:40 | tRNA anticodon loop | homologous HL_4V90_033 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6GXM_002 | No text annotation | ||
| HL_6GXM_004 | No text annotation | ||
| HL_6GXM_005 | No text annotation | ||
| HL_6GXM_007 | No text annotation | ||
| HL_6GXM_009 | T-loop with 2 stacked bulged bases | ||
| HL_6GXM_010 | T-loop with unstacked turn | ||
| HL_6GXM_011 | No text annotation | ||
| HL_6GXM_012 | Pseudoknot geometry | ||
| HL_6GXM_014 | GNRA | ||
| HL_6GXM_105 | No text annotation | ||
| HL_6GXM_015 | No text annotation | ||
| HL_6GXM_017 | No text annotation | ||
| HL_6GXM_019 | No text annotation | ||
| HL_6GXM_106 | No text annotation | ||
| HL_6GXM_020 | GNRA wlth tandem sheared | ||
| HL_6GXM_024 | No text annotation | ||
| HL_6GXM_027 | No text annotation | ||
| HL_6GXM_028 | No text annotation | ||
| HL_6GXM_107 | No text annotation | ||
| HL_6GXM_029 | GNRA | ||
| HL_6GXM_034 | No text annotation | ||
| HL_6GXM_035 | Pseudoknot geometry with 3' bulge | ||
| HL_6GXM_108 | No text annotation | ||
| HL_6GXM_036 | No text annotation | ||
| HL_6GXM_037 | Mini UNCG | ||
| HL_6GXM_039 | GNRA with extra cWW | ||
| HL_6GXM_041 | No text annotation | ||
| HL_6GXM_042 | No text annotation | ||
| HL_6GXM_045 | GNRA variation | ||
| HL_6GXM_047 | No text annotation | ||
| HL_6GXM_049 | No text annotation | ||
| HL_6GXM_053 | No text annotation | ||
| HL_6GXM_114 | No text annotation | ||
| HL_6GXM_055 | GNRA | ||
| HL_6GXM_056 | GNRA | ||
| HL_6GXM_061 | GNRA | ||
| HL_6GXM_062 | GNRA | ||
| HL_6GXM_064 | No text annotation | ||
| HL_6GXM_065 | UNCG variation | ||
| HL_6GXM_067 | GNRA | ||
| HL_6GXM_068 | No text annotation | ||
| HL_6GXM_071 | No text annotation | ||
| HL_6GXM_072 | GNRA with extra near cWW | ||
| HL_6GXM_111 | GNRA | ||
| HL_6GXM_074 | No text annotation | ||
| HL_6GXM_078 | UNCG | ||
| HL_6GXM_112 | tRNA anticodon loop | ||
| HL_6GXM_080 | UNCG | ||
| HL_6GXM_081 | GNRA wlth extra near cWW | ||
| HL_6GXM_087 | No text annotation | ||
| HL_6GXM_091 | GNRA | ||
| HL_6GXM_092 | GNRA | ||
| HL_6GXM_094 | No text annotation | ||
| HL_6GXM_115 | No text annotation | ||
| HL_6GXM_095 | GNRA | ||
| HL_6GXM_096 | GNRA | ||
| HL_6GXM_097 | T-loop with 3 stacked bulged bases | ||
| HL_6GXM_099 | UNCG | ||
| HL_6GXM_101 | tRNA D-loop | ||
| HL_6GXM_103 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6GXM_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_22311.1 | |
| IL_6GXM_002 | 1/A/36:37, 1/A/442:444 | Single bulged A | homologous IL_5J7L_246 NA | |
| IL_6GXM_003 | 1/A/43:44, 1/A/434:436 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_6GXM_005 | 1/A/183:184, 1/A/212:214 | Single stack bend | homologous IL_7A0S_005 IL_15011.2 | |
| IL_6GXM_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 NA | |
| IL_6GXM_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_6GXM_011 | 1/A/481:484, 1/A/496:509 | No text annotation | homologous IL_5J7L_255 NA | |
| IL_6GXM_012 | 1/A/536:539, 1/A/554:557 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_6GXM_013 | 1/A/564:566, 1/A/575:577 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_71625.2 | |
| IL_6GXM_014 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
| IL_6GXM_015 | 1/A/672:674, 1/A/806:808 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 NA | |
| IL_6GXM_016 | 1/A/674:678, 1/A/799:806 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_6GXM_017 | 1/A/697:698, 1/A/763:765 | Single bulged A | geometric IL_4V9F_025 IL_14190.2 | |
| IL_6GXM_018 | 1/A/702:703, 1/A/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_6GXM_020 | 1/A/738:740, 1/A/757:758 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_6GXM_021 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases | homologous IL_5J7L_265 NA | |
| IL_6GXM_183 | 1/A/844:848, 1/A/930:934 | No text annotation | geometric IL_5J7L_399 NA | |
| IL_6GXM_023 | 1/A/847:848, 1/A/930:933 | Stack outside cWW | homologous IL_5J7L_268 NA | |
| IL_6GXM_024 | 1/A/850:851, 1/A/926:928 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_6GXM_025 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 NA | |
| IL_6GXM_027 | 1/A/864:868, 1/A/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_6GXM_031 | 1/A/994:996, 1/A/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6GXM_032 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_08938.1 | |
| IL_6GXM_033 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_6GXM_034 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U | geometric IL_4WF9_038 IL_97561.2 | |
| IL_6GXM_035 | 1/A/1018:1024, 1/A/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_6GXM_036 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_6GXM_042 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.5 | |
| IL_6GXM_045 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_6GXM_047 | 1/A/1319:1323, 1/A/1331:1333 | C-loop | homologous IL_5J7L_291 NA | |
| IL_6GXM_048 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN | homologous IL_7A0S_048 IL_89021.3 | |
| IL_6GXM_049 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_6GXM_051 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN | homologous IL_5J7L_295 NA | |
| IL_6GXM_053 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_6GXM_054 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_6GXM_188 | 1/A/1474:1478, 1/A/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 NA | |
| IL_6GXM_057 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_6GXM_059 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation | homologous IL_7A0S_059 IL_12566.5 | |
| IL_6GXM_060 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
| IL_6GXM_189 | 1/A/1666:1674, 1/A/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_6GXM_062 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH | geometric IL_4WF9_065 IL_28217.1 | |
| IL_6GXM_063 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6GXM_067 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related | homologous IL_4WF9_069 IL_17069.6 | |
| IL_6GXM_068 | 1/A/1837:1840, 1/A/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_6GXM_070 | 1/A/1846:1849, 1/A/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_6GXM_190 | 1/A/1851:1860, 1/A/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_6GXM_073 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_6GXM_074 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_6GXM_075 | 1/A/2054:2056, 1/A/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_6GXM_076 | 1/A/2067:2069, 1/A/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_97561.2 | |
| IL_6GXM_077 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform | homologous IL_7A0S_076 IL_34520.2 | |
| IL_6GXM_078 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_6GXM_079 | 1/A/2085:2087, 1/A/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 NA | |
| IL_6GXM_086 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_6GXM_089 | 1/A/2453:2454, 1/A/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_15011.2 | |
| IL_6GXM_090 | 1/A/2454:2455, 1/A/2496:2498 | Major groove platform | geometric IL_4LFB_024 IL_48076.8 | |
| IL_6GXM_092 | 1/A/2459:2461, 1/A/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_4V9F_084 IL_36931.2 | |
| IL_6GXM_093 | 1/A/2466:2470, 1/A/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_6GXM_094 | 1/A/2507:2509, 1/A/2579:2582 | No text annotation | homologous IL_5J7L_339 NA | |
| IL_6GXM_095 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_4WF9_095 IL_68118.2 | |
| IL_6GXM_096 | 1/A/2512:2513, 1/A/2571:2574 | No text annotation | geometric IL_4WF9_096 IL_44609.2 | |
| IL_6GXM_097 | 1/A/2522:2523, 1/A/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_6GXM_195 | 1/A/2588:2591, 1/A/2603:2606 | No text annotation | ||
| IL_6GXM_098 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_6GXM_099 | 1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_6GXM_101 | 1/A/2680:2684, 1/A/2725:2727 | C-loop | homologous IL_5J7L_347 NA | |
| IL_6GXM_102 | 1/A/2687:2691, 1/A/2718:2722 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_6GXM_103 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_6GXM_104 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_6GXM_105 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation | geometric IL_5J7L_351 NA | |
| IL_6GXM_107 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_6GXM_108 | 1/A/2847:2852, 1/A/2865:2869 | tHS double platform | homologous IL_5J7L_354 NA | |
| IL_6GXM_196 | 1/B/34:38, 1/B/44:48 | No text annotation | homologous IL_9DFE_113 IL_58103.12 | |
| IL_6GXM_113 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA | |
| IL_6GXM_115 | 1/a/44:45, 1/a/396:398 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_6GXM_116 | 1/a/47:52, 1/a/359:361 | No text annotation | geometric IL_5J7L_003 NA | |
| IL_6GXM_117 | 1/a/54:56, 1/a/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.2 | |
| IL_6GXM_118 | 1/a/63:66, 1/a/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.2 | |
| IL_6GXM_119 | 1/a/67:69, 1/a/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
| IL_6GXM_122 | 1/a/128:131, 1/a/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 NA | |
| IL_6GXM_127 | 1/a/242:247, 1/a/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_6GXM_129 | 1/a/292:293, 1/a/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_6GXM_130 | 1/a/367:369, 1/a/392:393 | Single bulged U | geometric IL_5J7L_017 NA | |
| IL_6GXM_131 | 1/a/371:375, 1/a/389:390 | C-loop | geometric IL_5J7L_018 NA | |
| IL_6GXM_132 | 1/a/375:376, 1/a/387:389 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_6GXM_137 | 1/a/504:511, 1/a/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.1 | |
| IL_6GXM_138 | 1/a/515:521, 1/a/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6GXM_139 | 1/a/569:575, 1/a/880:881 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_6GXM_140 | 1/a/580:584, 1/a/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_6GXM_141 | 1/a/594:596, 1/a/644:645 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_6GXM_143 | 1/a/605:612, 1/a/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_6GXM_144 | 1/a/654:655, 1/a/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.2 | |
| IL_6GXM_146 | 1/a/662:666, 1/a/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_6GXM_199 | 1/a/673:677, 1/a/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.2 | |
| IL_6GXM_200 | 1/a/684:688, 1/a/699:706 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_6GXM_149 | 1/a/774:778, 1/a/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_6GXM_150 | 1/a/779:783, 1/a/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_6GXM_202 | 1/a/887:894, 1/a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_6GXM_152 | 1/a/922:923, 1/a/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_6GXM_153 | 1/a/925:927, 1/a/1390:1391 | Single bulged G | homologous IL_5J7L_040 NA | |
| IL_6GXM_154 | 1/a/933:935, 1/a/1380:1384 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_6GXM_155 | 1/a/953:954, 1/a/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_6GXM_159 | 1/a/1048:1050, 1/a/1208:1209 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_6GXM_161 | 1/a/1057:1058, 1/a/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_24264.1 | |
| IL_6GXM_163 | 1/a/1061:1063, 1/a/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.2 | |
| IL_6GXM_203 | 1/a/1124:1128, 1/a/1144:1149 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_6GXM_167 | 1/a/1247:1253, 1/a/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_6GXM_169 | 1/a/1259:1263, 1/a/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_6GXM_171 | 1/a/1399:1401, 1/a/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6GXM_172 | 1/a/1401:1404, 1/a/1497:1501 | No text annotation | homologous IL_5J7L_059 NA | |
| IL_6GXM_173 | 1/a/1405:1407, 1/a/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.2 | |
| IL_6GXM_204 | 1/a/1407:1409, 1/a/1491:1494 | No text annotation | ||
| IL_6GXM_176 | 1/a/1416:1419, 1/a/1481:1484 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_6GXM_177 | 1/a/1430:1435, 1/a/1466:1470 | Triple sheared related | homologous IL_5J7L_063 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6GXM_180 | Minor groove platform with extra cWW | ||
| IL_6GXM_004 | No text annotation | ||
| IL_6GXM_008 | No text annotation | ||
| IL_6GXM_181 | No text annotation | ||
| IL_6GXM_009 | No text annotation | ||
| IL_6GXM_182 | No text annotation | ||
| IL_6GXM_010 | No text annotation | ||
| IL_6GXM_019 | Triple sheared | ||
| IL_6GXM_022 | 90 degree turn | ||
| IL_6GXM_026 | Single bulged G | ||
| IL_6GXM_184 | Isolated non-canonical cWW pair | ||
| IL_6GXM_028 | Tandem non-canonical cWW pairs | ||
| IL_6GXM_029 | Double sheared with non-canonical cWW | ||
| IL_6GXM_030 | Tandem non-canonical cWW pairs | ||
| IL_6GXM_037 | Isolated non-canonical cWW pair | ||
| IL_6GXM_038 | Tandem non-canonical cWW pairs | ||
| IL_6GXM_185 | Partly complementary | ||
| IL_6GXM_039 | Kink-turn | ||
| IL_6GXM_040 | No text annotation | ||
| IL_6GXM_186 | No text annotation | ||
| IL_6GXM_041 | No text annotation | ||
| IL_6GXM_043 | No text annotation | ||
| IL_6GXM_044 | Kink-turn | ||
| IL_6GXM_046 | Major groove platform; stack outside cWW | ||
| IL_6GXM_050 | No text annotation | ||
| IL_6GXM_187 | No text annotation | ||
| IL_6GXM_052 | Tandem non-canonical cWW pairs | ||
| IL_6GXM_055 | No text annotation | ||
| IL_6GXM_056 | 180 degree turn | ||
| IL_6GXM_058 | UAA/GAN variation | ||
| IL_6GXM_061 | Major groove platform; stack outside cWW | ||
| IL_6GXM_064 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6GXM_065 | Triple sheared | ||
| IL_6GXM_066 | Single bulged A | ||
| IL_6GXM_069 | Major groove intercalation | ||
| IL_6GXM_071 | UAA/GAN related | ||
| IL_6GXM_072 | Bulged stacked bases | ||
| IL_6GXM_191 | Tandem non-canonical cWW pairs | ||
| IL_6GXM_080 | Isolated non-canonical cWW pair | ||
| IL_6GXM_192 | Tandem non-canonical cWW pairs | ||
| IL_6GXM_081 | Isolated non-canonical cWW pair | ||
| IL_6GXM_082 | No text annotation | ||
| IL_6GXM_193 | No text annotation | ||
| IL_6GXM_083 | Kink-turn related | ||
| IL_6GXM_084 | No text annotation | ||
| IL_6GXM_194 | No text annotation | ||
| IL_6GXM_085 | Tandem non-canonical cWW pairs | ||
| IL_6GXM_087 | Double sheared | ||
| IL_6GXM_088 | No text annotation | ||
| IL_6GXM_091 | Major groove platform with extra pair | ||
| IL_6GXM_100 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6GXM_106 | Major groove intercalation | ||
| IL_6GXM_109 | Major groove intercalation | ||
| IL_6GXM_110 | No text annotation | ||
| IL_6GXM_201 | No text annotation | ||
| IL_6GXM_111 | Major groove minor groove platform; mini C-loop | ||
| IL_6GXM_112 | No text annotation | ||
| IL_6GXM_114 | Single bulged G | ||
| IL_6GXM_120 | Minor groove platform | ||
| IL_6GXM_197 | Single bulged G | ||
| IL_6GXM_121 | Single bulged G, near cWW | ||
| IL_6GXM_123 | No text annotation | ||
| IL_6GXM_124 | Isolated cWH basepair | ||
| IL_6GXM_125 | tWH-tWH-tHW-tHW | ||
| IL_6GXM_126 | Minor groove platform | ||
| IL_6GXM_128 | No text annotation | ||
| IL_6GXM_133 | No text annotation | ||
| IL_6GXM_134 | No text annotation | ||
| IL_6GXM_135 | tSH-tHW-tWW | ||
| IL_6GXM_136 | No text annotation | ||
| IL_6GXM_142 | Major groove minor groove platform; mini C-loop | ||
| IL_6GXM_145 | No text annotation | ||
| IL_6GXM_198 | Single stack bend | ||
| IL_6GXM_147 | No text annotation | ||
| IL_6GXM_148 | Kink-turn | ||
| IL_6GXM_151 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_6GXM_156 | Minor groove platform | ||
| IL_6GXM_157 | Single stack bend | ||
| IL_6GXM_158 | No text annotation | ||
| IL_6GXM_160 | Isolated cWS basepair | ||
| IL_6GXM_162 | Single bulged U | ||
| IL_6GXM_164 | No text annotation | ||
| IL_6GXM_165 | Minor groove platform | ||
| IL_6GXM_166 | No text annotation | ||
| IL_6GXM_168 | 180 degree turn | ||
| IL_6GXM_170 | No text annotation | ||
| IL_6GXM_174 | No text annotation | ||
| IL_6GXM_175 | Isolated non-canonical cWW pair | ||
| IL_6GXM_178 | Single bulged A | ||
| IL_6GXM_179 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6GXM_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation | homologous J3_5J7L_036 NA | |
| J3_6GXM_026 | 1/A/32:35, 1/A/445:461, 1/A/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_6GXM_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_6GXM_003 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_6GXM_004 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6GXM_005 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_6GXM_006 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation | homologous J3_5J7L_042 NA | |
| J3_6GXM_028 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_6GXM_029 | 1/A/1424:1429, 1/A/1564:1565, 1/A/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_6GXM_008 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_6GXM_009 | 1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_6GXM_012 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J3_6GXM_013 | 1/B/10:16, 1/B/68:70, 1/B/106:110 | No text annotation | homologous J3_5J7L_049 NA | |
| J3_6GXM_014 | 1/a/46:47, 1/a/361:367, 1/a/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_6GXM_030 | 1/a/46:52, 1/a/359:367, 1/a/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_6GXM_015 | 1/a/586:588, 1/a/651:654, 1/a/754:755 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_6GXM_031 | 1/a/586:588, 1/a/651:655, 1/a/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_6GXM_016 | 1/a/672:673, 1/a/717:725, 1/a/732:734 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_6GXM_017 | 1/a/826:829, 1/a/857:861, 1/a/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_6GXM_018 | 1/a/936:939, 1/a/1344:1350, 1/a/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_6GXM_019 | 1/a/943:946, 1/a/1235:1237, 1/a/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_6GXM_020 | 1/a/955:962, 1/a/973:984, 1/a/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_6GXM_022 | 1/a/1063:1068, 1/a/1107:1113, 1/a/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_6GXM_033 | 1/a/1073:1074, 1/a/1083:1086, 1/a/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_6GXM_024 | 1/a/1116:1118, 1/a/1155:1158, 1/a/1181:1184 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_6GXM_034 | 1/a/1116:1118, 1/a/1155:1161, 1/a/1175:1184 | No text annotation | homologous J3_5J7L_054 NA | |
| J4_6GXM_001 | 1/A/268:269, 1/A/370:375, 1/A/399:406, 1/A/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_6GXM_002 | 1/A/601:604, 1/A/624:628, 1/A/635:638, 1/A/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_6GXM_003 | 1/A/1270:1276, 1/A/1294:1295, 1/A/1645:1648, 1/A/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_6GXM_004 | 1/A/1310:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_6GXM_005 | 1/A/1313:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_6GXM_007 | 1/A/1772:1776, 1/A/1788:1792, 1/A/1827:1830, 1/A/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_6GXM_008 | 1/A/1833:1835, 1/A/1905:1906, 1/A/1924:1933, 1/A/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_6GXM_015 | 1/A/2285:2289, 1/A/2343:2347, 1/A/2370:2372, 1/A/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_6GXM_010 | 1/A/2643:2646, 1/A/2674:2676, 1/A/2731:2735, 1/A/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J4_6GXM_011 | 1/a/115:122, 1/a/239:240, 1/a/286:289, 1/a/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_6GXM_013 | 1/a/575:577, 1/a/764:769, 1/a/810:821, 1/a/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J5_6GXM_001 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:150, 1/A/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_6GXM_002 | 1/A/531:533, 1/A/560:564, 1/A/577:579, 1/A/1261:1262, 1/A/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_6GXM_003 | 1/A/584:589, 1/A/668:671, 1/A/809:812, 1/A/1195:1196, 1/A/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_6GXM_004 | 1/A/1674:1682, 1/A/1706:1707, 1/A/1751:1752, 1/A/1756:1764, 1/A/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_6GXM_005 | 1/A/2057:2064, 1/A/2446:2453, 1/A/2500:2507, 1/A/2582:2588, 1/A/2606:2611 | No text annotation | ||
| J5_6GXM_006 | 1/a/36:39, 1/a/403:406, 1/a/436:440, 1/a/497:500, 1/a/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_6GXM_007 | 1/a/36:39, 1/a/403:406, 1/a/436:442, 1/a/492:500, 1/a/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_6GXM_008 | 1/a/58:61, 1/a/106:113, 1/a/314:316, 1/a/337:339, 1/a/350:354 | No text annotation | homologous J5_6CZR_021 NA | |
| J6_6GXM_001 | 1/A/45:46, 1/A/179:183, 1/A/214:225, 1/A/230:235, 1/A/262:266, 1/A/426:433 | No text annotation | ||
| J6_6GXM_002 | 1/A/2074:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2284, 1/A/2384:2395, 1/A/2421:2435 | No text annotation | ||
| J7_6GXM_001 | 1/A/8:15, 1/A/525:531, 1/A/2018:2023, 1/A/2040:2043, 1/A/2625:2630, 1/A/2788:2789, 1/A/2894:2895 | No text annotation | ||
| J7_6GXM_002 | 1/A/817:822, 1/A/835:838, 1/A/940:946, 1/A/971:976, 1/A/987:991, 1/A/1163:1164, 1/A/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6GXM_027 | No text annotation | ||
| J3_6GXM_007 | No text annotation | ||
| J3_6GXM_010 | No text annotation | ||
| J3_6GXM_011 | No text annotation | ||
| J3_6GXM_021 | No text annotation | ||
| J3_6GXM_032 | No text annotation | ||
| J3_6GXM_023 | No text annotation | ||
| J3_6GXM_025 | No text annotation | ||
| J4_6GXM_006 | No text annotation | ||
| J4_6GXM_009 | No text annotation | ||
| J4_6GXM_012 | No text annotation | ||
| J4_6GXM_014 | tRNA junction |
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